BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB020F06SP1|AL427650
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 697 0.0
3x_Contig234 160 6e-39
>3x_Contig1724
Length = 20938
Score = 697 bits (345), Expect = 0.0
Identities = 463/502 (92%), Gaps = 2/502 (0%)
Strand = Plus / Minus
Query: 451 gaggagccacgacaaaaaaagcaaccaaaacaaacggagaaactagcagcatgcaaaaca 510
||||||||||| || || |||| |||| ||| |||||||||| ||||||||| | |
Sbjct: 12263 gaggagccacgtcataattagcatccaattcaatcggagaaacttgcagcatgctattct 12204
Query: 511 tgaagaagggtagccattcagtggcatccctccagaaanacgttgaantgcccgaaacca 570
||||| ||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 12203 tgaagttgggtagccattcagtggcatccctccagattttcgttgatttgcccgaatcct 12144
Query: 571 gcatcaaaaaaagaacgcaga-cagccagtanaagaatgcaccaccgawcttgtactcct 629
|| ||||| | || |||||| | |||||| |||||||||||||||| ||||| |||||
Sbjct: 12143 gcttcaaatattgatcgcagatctgccagtttaagaatgcaccaccgatcttgttctcct 12084
Query: 630 agcggtaatgtttgaaaagaacaccatcaatgacaacgtccactttcactccactgtggc 689
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12083 tgcggtattgtttgaaaagaacaccatcaatgacaacgtccactttcactccactgtggc 12024
Query: 690 caatgtccaccacaattccactcgatcttccctgactcaacgtgttgcagacagcctcat 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12023 caatgtccaccacaattccactcgatcttccctgactcaacgtgttgcagacagcctcat 11964
Query: 750 tcaaaagttggaccattggaaaaccgtaccccaacagttgttccataaatctcttacgac 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11963 tcaaaagttggaccattggaaaaccgtaccccaacagttgttccataaatctcttacgac 11904
Query: 810 gcgcactgtttaagtcggaaggtaagacaacacatactggatagtcttcgaactgtatgc 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903 gcgcactgtttaagtcggaaggtaagacaacacatactggatagtcttcgaactgtatgc 11844
Query: 870 ctaggctttgaaagatgtactgccattgagcatccatcatatcccaatcatttggaag-y 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11843 ctaggctttgaaagatgtactgccattgagcatccatcatatcccaatcatttggaagtc 11784
Query: 929 cgtccttatcgtacaattggta 950
||| ||||||||||||||||||
Sbjct: 11783 cgttcttatcgtacaattggta 11762
Score = 287 bits (142), Expect = 3e-77
Identities = 207/237 (87%)
Strand = Plus / Minus
Query: 11 aatgttcgaggtacttcctgtcactagaatgttcgtaagcagtagactttgtagttgttc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12703 aatgttcgaggtacttcctgtcactagaatgttcgtaagcagtagactttgtagttgttc 12644
Query: 71 agtttnttwgytktgcgttgggatgttcgtatcctcgttgttgtagcattggawgcccga 130
|| | | | ||||||||||||||||||||||||||||||| || |||| ||||||
Sbjct: 12643 agaagtgtagctgtgcgttgggatgttcgtatcctcgttgttgttgctttggttgcccga 12584
Query: 131 rgaagcataacccgtcgtagtggaggaccctgtagtgttactgccwgcrgwggacawwgc 190
||||||| |||||||||||||||||||||||||||||||||||| || | ||||| ||
Sbjct: 12583 ggaagcattacccgtcgtagtggaggaccctgtagtgttactgcctgcggtggacattgc 12524
Query: 191 atagacaccatwaaaaaaacawaggatgcatgcacagaacaaaccaatgaccccaat 247
|| |||||||| || |||| |||||||||| | || ||| ||||||||||||||
Sbjct: 12523 attgacaccatttaataaactttggatgcatgctctgatcaatccaatgaccccaat 12467
>3x_Contig234
Length = 1152
Score = 160 bits (79), Expect = 6e-39
Identities = 96/104 (92%)
Strand = Plus / Plus
Query: 11 aatgttcgaggtacttcctgtcactagaatgttcgtaagcagtagactttgtagttgttc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1043 aatgttcgaggtacttcctgtcactagaatgttcgtaagcagtagactttgtagttgttc 1102
Query: 71 agtttnttwgytktgcgttgggatgttcgtatcctcgttgttgt 114
|| | | | |||||||||||||||||||||||||||||||
Sbjct: 1103 agaagtgtagctgtgcgttgggatgttcgtatcctcgttgttgt 1146
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5259
Number of Sequences: 1807
Number of extensions: 5259
Number of successful extensions: 128
Number of sequences better than 1.0e-20: 2
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 50 (101.5 bits)